Bins that were identified in single profile 'XY MERGED' and stored in the database as "10 CULTIVARS" collection, describe 10 bins accountig for 45,052,884 nucleotides, which represent 99.96% of all nucleotides stored in the annotation database, and 99.96% of nucleotides stored in the profile database.
The single profile database that was generated with the minimum contig length of 1,000 contained 10 contigs, which correspond to 100% of all contigs, and 100% of all nucleotides found in the annotation database.
Profile DB for XY MERGED w/ 16 samples.
Key Value
Created on 2015-06-14 12:11:20
Version 5
Minimum conting length 1,000
Number of contigs 10
Number of splits 2,254
Total nucleotides 45.07 Mb
Annotation DB
Key Value
Created on 2015-06-14 12:11:20
Version 3
Split length 20,000
Number of contigs 10
Number of splits 2,254
Total nucleotides 45.07 Mb
K-mer size 4

Summary of general characteristics of each bin.

Bin Taxonomy Total Size Num Contigs N50 GC Content Compl. Red.
 
Bin_E N/A 1 4,677,326 61.52% 5.00%
 
Bin_J N/A 1 4,301,017 57.18% 5.67%
 
Bin_K N/A 1 4,126,405 57.31% 5.00%
 
Bin_H N/A 1 3,979,725 57.43% 5.00%
 
Bin_B N/A 1 3,668,536 67.66% 4.56%
 
Bin_F N/A 1 3,636,972 57.80% 4.38%
 
Bin_A N/A 1 3,440,295 39.04% 4.20%
 
Bin_C N/A 1 6,831,462 58.79% 5.19%
 
Bin_D N/A 1 6,831,407 58.79% 5.19%
 
Bin_G N/A 1 3,559,739 58.62% 4.38%

TAB-delimited matrix file for abundance: bins_across_samples/abundance.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.33 0.06 0.04 0.07 0.41 0.23 0.52 0.82 1.41 1.79 ...
 
Bin_J 0.73 0.53 1.32 0.13 1.21 1.06 0.53 0.38 1.08 0.64 ...
 
Bin_K 0.74 0.56 1.35 0.12 1.27 1.12 0.51 0.44 0.00 0.47 ...
 
Bin_H 0.81 0.61 1.43 0.13 1.27 1.21 0.48 0.42 0.00 0.36 ...
 
Bin_B 0.02 0.02 0.03 0.03 0.20 0.11 0.20 0.55 3.29 1.93 ...
 
Bin_F 9.20 10.14 7.36 11.47 6.55 7.09 8.94 6.96 3.77 3.63 ...
 
Bin_A 0.00 0.00 0.00 0.01 0.05 0.03 0.06 0.73 0.90 1.39 ...
 
Bin_C 0.02 0.03 0.04 0.08 0.12 0.21 0.12 0.29 0.00 0.28 ...
 
Bin_D 0.02 0.03 0.04 0.08 0.13 0.20 0.13 0.36 0.73 0.15 ...
 
Bin_G 0.09 0.10 0.14 0.06 0.35 0.26 0.33 0.52 0.00 0.72 ...

TAB-delimited matrix file for variability: bins_across_samples/variability.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 2.15 1.49 0.80 0.60 0.76 0.52 1.60 0.16 0.00 0.00 ...
 
Bin_J 1.68 0.94 1.03 0.16 0.19 0.40 0.43 0.03 0.00 0.00 ...
 
Bin_K 2.59 1.17 1.29 0.16 0.37 0.50 0.44 0.11 0.00 0.00 ...
 
Bin_H 2.89 1.07 1.52 0.10 0.17 0.30 0.46 0.05 0.00 0.00 ...
 
Bin_B 3.53 2.98 2.41 1.09 1.18 2.02 1.95 0.22 0.00 0.00 ...
 
Bin_F 281.91 158.19 38.33 6.31 1.89 2.16 3.64 0.57 0.00 0.04 ...
 
Bin_A 0.85 1.00 0.59 0.45 0.62 0.97 1.41 0.26 0.00 0.00 ...
 
Bin_C 1.38 1.18 1.01 0.62 0.95 0.99 1.55 0.33 0.00 0.00 ...
 
Bin_D 1.44 1.32 0.91 0.33 1.37 0.99 1.56 0.51 0.00 0.00 ...
 
Bin_G 2.17 1.29 1.03 0.10 0.14 0.61 0.55 0.05 0.00 0.00 ...

TAB-delimited matrix file for relative_abundance: bins_across_samples/relative_abundance.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.91 0.01 0.00 0.00 0.02 0.02 0.02 0.00 0.00 0.01 ...
 
Bin_J 0.27 0.11 0.44 0.00 0.06 0.09 0.02 0.00 0.00 0.00 ...
 
Bin_K 0.25 0.12 0.45 0.00 0.06 0.09 0.02 0.00 0.00 0.00 ...
 
Bin_H 0.26 0.13 0.45 0.00 0.05 0.09 0.01 0.00 0.00 0.00 ...
 
Bin_B 0.03 0.03 0.04 0.04 0.04 0.02 0.05 0.02 0.00 0.01 ...
 
Bin_F 0.19 0.21 0.15 0.22 0.04 0.09 0.09 0.01 0.00 0.00 ...
 
Bin_A 0.02 0.00 0.00 0.04 0.01 0.01 0.00 0.01 0.00 0.01 ...
 
Bin_C 0.04 0.09 0.12 0.17 0.06 0.39 0.06 0.01 0.00 0.00 ...
 
Bin_D 0.04 0.08 0.12 0.17 0.05 0.37 0.09 0.00 0.00 0.00 ...
 
Bin_G 0.14 0.10 0.23 0.01 0.09 0.08 0.02 0.03 0.00 0.01 ...

TAB-delimited matrix file for normalized_coverage: bins_across_samples/normalized_coverage.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_J 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_K 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_H 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_B 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_F 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_A 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_C 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_D 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_G 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...

TAB-delimited matrix file for portion_covered: bins_across_samples/portion_covered.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.35 0.02 0.01 0.00 0.01 0.02 0.01 0.00 0.00 0.00 ...
 
Bin_J 0.54 0.32 0.51 0.03 0.07 0.13 0.04 0.00 0.00 0.00 ...
 
Bin_K 0.55 0.33 0.53 0.03 0.07 0.13 0.03 0.00 0.00 0.00 ...
 
Bin_H 0.58 0.36 0.55 0.03 0.07 0.14 0.03 0.00 0.00 0.00 ...
 
Bin_B 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_F 0.98 0.98 0.96 0.91 0.30 0.60 0.46 0.04 0.00 0.00 ...
 
Bin_A 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ...
 
Bin_C 0.02 0.02 0.03 0.02 0.00 0.02 0.01 0.00 0.00 0.00 ...
 
Bin_D 0.02 0.02 0.03 0.02 0.00 0.02 0.01 0.00 0.00 0.00 ...
 
Bin_G 0.05 0.04 0.05 0.01 0.01 0.02 0.01 0.00 0.00 0.00 ...

TAB-delimited matrix file for mean_coverage: bins_across_samples/mean_coverage.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.51 0.05 0.03 0.02 0.03 0.03 0.04 0.01 0.00 0.00 ...
 
Bin_J 1.13 0.48 1.03 0.03 0.08 0.15 0.05 0.00 0.00 0.00 ...
 
Bin_K 1.14 0.50 1.05 0.03 0.09 0.16 0.04 0.00 0.00 0.00 ...
 
Bin_H 1.25 0.55 1.12 0.03 0.09 0.18 0.04 0.00 0.00 0.00 ...
 
Bin_B 0.03 0.02 0.02 0.01 0.01 0.02 0.02 0.00 0.00 0.00 ...
 
Bin_F 14.25 9.05 5.74 3.14 0.44 1.04 0.76 0.05 0.00 0.00 ...
 
Bin_A 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ...
 
Bin_C 0.03 0.03 0.03 0.02 0.01 0.03 0.01 0.00 0.00 0.00 ...
 
Bin_D 0.03 0.03 0.03 0.02 0.01 0.03 0.01 0.00 0.00 0.00 ...
 
Bin_G 0.13 0.08 0.11 0.02 0.02 0.04 0.03 0.00 0.00 0.00 ...

TAB-delimited matrix file for max_normalized_ratio: bins_across_samples/max_normalized_ratio.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.98 0.01 0.00 0.00 0.03 0.03 0.04 0.01 0.00 0.01 ...
 
Bin_J 0.60 0.26 0.97 0.01 0.13 0.21 0.04 0.00 0.00 0.00 ...
 
Bin_K 0.56 0.26 0.98 0.01 0.15 0.22 0.05 0.01 0.00 0.00 ...
 
Bin_H 0.59 0.29 0.99 0.01 0.13 0.22 0.03 0.01 0.00 0.00 ...
 
Bin_B 0.04 0.03 0.05 0.05 0.06 0.04 0.06 0.04 0.01 0.01 ...
 
Bin_F 0.85 0.93 0.66 0.97 0.18 0.39 0.38 0.03 0.01 0.01 ...
 
Bin_A 0.02 0.00 0.00 0.04 0.01 0.01 0.00 0.01 0.00 0.01 ...
 
Bin_C 0.08 0.18 0.26 0.34 0.12 0.70 0.13 0.02 0.00 0.00 ...
 
Bin_D 0.08 0.18 0.26 0.35 0.12 0.68 0.18 0.01 0.00 0.00 ...
 
Bin_G 0.27 0.19 0.42 0.03 0.18 0.18 0.06 0.04 0.00 0.01 ...

TAB-delimited matrix file for std_coverage: bins_across_samples/std_coverage.txt

Bin SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... SAND_ ... ...
 
Bin_E 0.83 0.20 0.13 0.06 0.12 0.16 0.19 0.03 0.00 0.00 ...
 
Bin_J 1.35 0.79 1.27 0.18 0.30 0.41 0.21 0.02 0.00 0.00 ...
 
Bin_K 1.39 0.83 1.29 0.18 0.32 0.45 0.22 0.03 0.00 0.00 ...
 
Bin_H 1.42 0.86 1.33 0.18 0.31 0.46 0.21 0.02 0.00 0.00 ...
 
Bin_B 0.15 0.12 0.11 0.06 0.09 0.09 0.11 0.03 0.00 0.00 ...
 
Bin_F 5.44 3.95 3.14 2.04 0.81 1.16 1.09 0.23 0.00 0.01 ...
 
Bin_A 0.03 0.02 0.02 0.02 0.02 0.03 0.03 0.04 0.00 0.00 ...
 
Bin_C 0.18 0.19 0.19 0.15 0.06 0.18 0.08 0.01 0.00 0.00 ...
 
Bin_D 0.18 0.18 0.20 0.15 0.07 0.18 0.08 0.02 0.00 0.00 ...
 
Bin_G 0.37 0.26 0.31 0.07 0.11 0.15 0.11 0.02 0.00 0.00 ...

This panel shows how much of the mapped data is recruited by each bin (and how much of the mapped data was not binned under 'splits_not_binned' column). The way these percents calculated is quite simple: summarize the mean coverage of each split in each bin, and normalize every bin with respect to each other. It is critical to remember that these values do not take the unasssambled data into account. This is how you should read this table: "X percent of all mapped reads in Sample Y mapped to splits that were binned into bin Z".

TAB-delimited matrix file for percent recruitment: bins_across_samples/bins_percent_recruitment.txt

Sample Bin_A Bin_B Bin_C Bin_D Bin_E Bin_F Bin_G Bin_H Bin_J Bin_K __splits_not_binned__
SAND_OILED_OS_A 0.02% 0.14% 0.28% 0.29% 3.45% 74.28% 0.68% 7.12% 6.97% 6.75% 0.02%
SAND_OILED_OS_B 0.04% 0.18% 0.52% 0.51% 0.59% 81.82% 0.75% 5.42% 5.08% 5.09% 0.00%
SAND_OILED_OS_C 0.03% 0.21% 0.66% 0.68% 0.41% 59.39% 1.11% 12.66% 12.55% 12.30% 0.00%
SAND_OILED_OS_D 0.10% 0.27% 1.26% 1.27% 0.71% 92.54% 0.44% 1.11% 1.20% 1.10% 0.00%
SAND_OILED_OS_E 0.37% 1.60% 1.75% 1.91% 4.27% 52.90% 2.79% 11.25% 11.57% 11.58% 0.01%
SAND_OILED_OS_F 0.21% 0.85% 3.14% 3.07% 2.36% 57.28% 2.05% 10.72% 10.09% 10.22% 0.00%
SAND_OILED_OS_G 0.47% 1.61% 1.82% 1.97% 5.37% 72.17% 2.62% 4.21% 5.06% 4.68% 0.01%
SAND_OILED_OS_H 5.55% 4.48% 4.45% 5.46% 8.47% 56.22% 4.11% 3.67% 3.59% 4.00% 0.00%
SAND_PREOIL_OS_S1 6.88% 26.70% 0.00% 11.05% 14.66% 30.43% 0.00% 0.00% 10.27% 0.00% 0.00%
SAND_PREOIL_OS_S2 10.61% 15.63% 4.28% 2.32% 18.57% 29.33% 5.69% 3.20% 6.13% 4.25% 0.00%
SAND_PREOIL_OS_S3 11.92% 14.92% 9.43% 4.87% 17.11% 18.70% 7.09% 2.64% 7.39% 5.93% 0.00%
SAND_PREOIL_OS_S4 13.19% 29.80% 5.10% 1.77% 6.58% 26.45% 4.15% 7.43% 1.81% 3.73% 0.00%
SAND_RECOVERED_OS_I600 5.77% 13.08% 10.90% 8.04% 17.16% 21.53% 6.39% 5.78% 5.48% 5.86% 0.00%
SAND_RECOVERED_OS_I606 5.88% 15.25% 9.53% 9.45% 12.53% 22.86% 6.77% 5.98% 7.25% 4.49% 0.00%
SAND_RECOVERED_OS_J598 5.16% 11.12% 11.45% 11.11% 13.64% 24.99% 5.50% 5.92% 5.39% 5.71% 0.00%
SAND_RECOVERED_OS_J604 5.64% 13.13% 10.27% 9.70% 12.42% 28.33% 5.40% 5.39% 5.16% 4.55% 0.00%

Functions (none found)

Hidden Markov Model Hits (none found)