Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon
Methanogenesis, CO2 => methane
Acetyl-CoA pathway, CO2 => acetyl-CoA
Purine degradation, xanthine => urea
Methanogenesis, methylamine/dimethylamine/trimethylamine => methane
Methanogenesis, methanol => methane
Pyocyanine biosynthesis, chorismate => pyocyanine
beta-Oxidation, acyl-CoA synthesis
GABA biosynthesis, eukaryotes, putrescine => GABA
Ascorbate degradation, ascorbate => D-xylulose-5P
ADP-L-glycero-D-manno-heptose biosynthesis
Sphingosine biosynthesis
Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
Dissimilatory nitrate reduction, nitrate => ammonia
Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
CAM (Crassulacean acid metabolism), dark
UDP-L-FucNAm biosynthesis
Dermatan sulfate degradation
Chondroitin sulfate degradation
Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Glyoxylate cycle
Histidine degradation, histidine => N-formiminoglutamate => glutamate
Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2
Lipoic acid biosynthesis, octanoyl-CoA => dihydrolipoyl-E2
Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H
Coenzyme M biosynthesis
Polyamine biosynthesis, arginine => ornithine => putrescine
KDO2-lipid A modification pathway
Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol
Hydroxypropionate-hydroxybutylate cycle
Riboflavin biosynthesis, fungi, GTP => riboflavin/FMN/FAD
Lysine degradation, lysine => saccharopine => acetoacetyl-CoA
Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine
Ethylmalonyl pathway
Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4
Tetrahydrobiopterin biosynthesis, GTP => BH4
3-Hydroxypropionate bi-cycle
Anoxygenic photosynthesis in green nonsulfur bacteria
Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Citrate cycle (TCA cycle, Krebs cycle)
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P
Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol
beta-Lactam resistance, Bla system
NADH:quinone oxidoreductase, prokaryotes
Multidrug resistance, efflux pump MdtEF-TolC
Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
Keratan sulfate degradation
Heparan sulfate degradation
Succinate dehydrogenase, prokaryotes
Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
GABA (gamma-Aminobutyrate) shunt
CMP-KDO biosynthesis
Cytochrome bd ubiquinol oxidase
Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
Pertussis pathogenicity signature, T1SS
Multidrug resistance, efflux pump AcrEF-TolC
Multidrug resistance, efflux pump MexXY-OprM
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type
Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol
Multidrug resistance, efflux pump MexAB-OprM
Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
Staphyloferrin B biosynthesis, L-serine => staphyloferrin B
Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone
Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA
beta-Oxidation
Nitrogen fixation, nitrogen => ammonia
Glutathione biosynthesis, glutamate => glutathione
O-glycan biosynthesis, mannose type (core M3)
Heme biosynthesis, animals and fungi, glycine => heme
Siroheme biosynthesis, glutamyl-tRNA => siroheme
Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme
Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Dissimilatory sulfate reduction, sulfate => H2S
Sulfate-sulfur assimilation
Pectin degradation
C5 isoprenoid biosynthesis, mevalonate pathway, archaea
C5 isoprenoid biosynthesis, mevalonate pathway
C10-C20 isoprenoid biosynthesis, archaea
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
C10-C20 isoprenoid biosynthesis, bacteria
C10-C20 isoprenoid biosynthesis, plants
N-glycan precursor biosynthesis
C1-unit interconversion, eukaryotes
Photorespiration
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
Incomplete reductive citrate cycle, acetyl-CoA => oxoglutarate
Fatty acid biosynthesis, initiation
Dicarboxylate-hydroxybutyrate cycle
Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Fatty acid biosynthesis in mitochondria, animals
Fatty acid biosynthesis, elongation
Fatty acid biosynthesis in mitochondria, fungi
Formaldehyde assimilation, xylulose monophosphate pathway
Formaldehyde assimilation, ribulose monophosphate pathway
Triacylglycerol biosynthesis
Aurachin biosynthesis, anthranilate => aurachin A
Vancomycin resistance, D-Ala-D-Ser type
Trehalose biosynthesis, D-glucose 1P => trehalose
Glycogen biosynthesis, glucose-1P => glycogen/starch
Cysteine biosynthesis, methionine => cysteine
UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc
UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc
Reductive pentose phosphate cycle (Calvin cycle)
Anoxygenic photosynthesis in purple bacteria
Oxygenic photosynthesis in plants and cyanobacteria
Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P
Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P
D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P
Pyruvate oxidation, pyruvate => acetyl-CoA
Glycolysis, core module involving three-carbon compounds
Gluconeogenesis, oxaloacetate => fructose-6P
Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP
C4-dicarboxylic acid cycle, NAD - malic enzyme type
Vancomycin resistance, D-Ala-D-Lac type
Methanogen
Methanogenesis, acetate => methane
Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Acetogen
Ascorbate biosynthesis, animals, glucose-1P => ascorbate
dTDP-L-rhamnose biosynthesis
Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP
Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
Guanine ribonucleotide biosynthesis IMP => GDP,GTP
Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Pentose phosphate pathway (Pentose phosphate cycle)
Reductive citrate cycle (Arnon-Buchanan cycle)
Anoxygenic photosynthesis in green sulfur bacteria
Methionine degradation
Ethylene biosynthesis, methionine => ethylene
Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
CAM (Crassulacean acid metabolism), light
C4-dicarboxylic acid cycle, NADP - malic enzyme type
Heme biosynthesis, plants and bacteria, glutamate => heme
Nucleotide sugar biosynthesis, glucose => UDP-glucose
C1-unit interconversion, prokaryotes
Glycogen degradation, glycogen => glucose-6P
Methionine salvage pathway
Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
Formaldehyde assimilation, serine pathway
Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
V/A-type ATPase, prokaryotes
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Tyrosine biosynthesis, chorismate => HPP => tyrosine
Multidrug resistance, efflux pump MepA
Thiamine biosynthesis, pyridoxal-5P => TMP/thiamine/TPP
PRPP biosynthesis, ribose 5P => PRPP
C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
Tetrahydrofolate biosynthesis, mediated by PTPS, GTP => THF
Glucuronate pathway (uronate pathway)
Cysteine biosynthesis, serine => cysteine
Tetrahydrofolate biosynthesis, GTP => THF
Tetrahydrofolate biosynthesis, mediated by ribA and trpF, GTP => THF
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/glycine) => TMP/TPP
F-type ATPase, prokaryotes and chloroplasts
NAD biosynthesis, aspartate => quinolinate => NAD
NAD biosynthesis, tryptophan => quinolinate => NAD
Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Pantothenate biosynthesis, 2-oxoisovalerate/spermine => pantothenate
Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Tryptophan biosynthesis, chorismate => tryptophan
Ectoine biosynthesis, aspartate => ectoine
Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Threonine biosynthesis, aspartate => homoserine => threonine
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Coenzyme A biosynthesis, archaea, 2-oxoisovalerate => 4-phosphopantoate => CoA
Methionine biosynthesis, apartate => homoserine => methionine
Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP
Serine biosynthesis, glycerate-3P => serine
Leucine degradation, leucine => acetoacetate + acetyl-CoA
C5 isoprenoid biosynthesis, non-mevalonate pathway
Coenzyme A biosynthesis, pantothenate => CoA
Histidine biosynthesis, PRPP => histidine
Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Inosine monophosphate biosynthesis, PRPP + glutamine => IMP
Urea cycle
Arginine biosynthesis, ornithine => arginine
Ornithine biosynthesis, glutamate => ornithine
Proline biosynthesis, glutamate => proline
Thiamine salvage pathway, HMP/HET => TMP
Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin
Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide
Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide
D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P
D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P
Ascorbate biosynthesis, plants, fructose-6P => ascorbate
Nucleotide sugar biosynthesis, galactose => UDP-galactose
Assimilatory sulfate reduction, sulfate => H2S
Methylaspartate cycle
Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA
KC MAG 00120
KC MAG 00178
KC MAG 00055
KC MAG 00151
KC MAG 00162
KC MAG 00116
KC MAG 00022
KC MAG 00145
KC MAG 00051
KC MAG 00147
KC MAG 00079
KC MAG 00097
KC MAG 00130
KC MAG 00100
KC MAG 00129
KC MAG 00082
KC MAG 00099
KC MAG 00106
KC MAG 00091
KC MAG 00118
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