modifications-txt [artifact]

A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-tabulate-trnaseq

Required or used by

anvi-plot-trnaseq

Description

This tabular file contains data on predicted modifications in tRNA-seq seeds.

This file is produced by anvi-tabulate-trnaseq. The artifact for that program describes this and related tables in detail.

This tab-delimited file can be easily manipulated by the user. It is required input for anvi-plot-trnaseq.

Example

The modifications shown in this table are from the seeds represented in the seeds-specific-txt and seeds-non-specific-txt example tables.

gene_callers_id	contig_name	anticodon	aa	domain	phylum	class	order	family	genus	species	taxon_percent_id	seed_position	ordinal_name	ordinal_position	canonical_position	reference	sample_name	A	C	G	T
0	c_000000684460_DB_R05_06	TAC	Val	Bacteria	Firmicutes	Clostridia	Lachnospirales	Lachnospiraceae			100	19	d_loop_beta_1	22	20	G	DB_01	142	589	69411	1315
0	c_000000684460_DB_R05_06	TAC	Val	Bacteria	Firmicutes	Clostridia	Lachnospirales	Lachnospiraceae			100	19	d_loop_beta_1	22	20	G	DB_03	217	1056	83751	2592
0	c_000000684460_DB_R05_06	TAC	Val	Bacteria	Firmicutes	Clostridia	Lachnospirales	Lachnospiraceae			100	19	d_loop_beta_1	22	20	G	DB_05	42	212	28784	515
0	c_000000684460_DB_R05_06	TAC	Val	Bacteria	Firmicutes	Clostridia	Lachnospirales	Lachnospiraceae			100	19	d_loop_beta_1	22	20	G	DB_07	102	429	45633	977
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	32	anticodon_loop_1	36	32	T	DB_01	0	51	14	77
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	32	anticodon_loop_1	36	32	T	DB_03	1	274	97	642
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	32	anticodon_loop_1	36	32	T	DB_05	0	78	17	137
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	32	anticodon_loop_1	36	32	T	DB_07	0	19	18	87
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	37	anticodon_loop_6	41	37	G	DB_01	0	1	137	5
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	37	anticodon_loop_6	41	37	G	DB_03	5	18	916	64
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	37	anticodon_loop_6	41	37	G	DB_05	6	3	222	7
1	c_000000805276_DB_R05_05	ACG	Arg	Bacteria	Firmicutes						98.649	37	anticodon_loop_6	41	37	G	DB_07	0	15	104	1

Edit this file to update this information.