anvi-import-functions [program]

Parse and store functional annotation of genes.

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Can provide

functions

Can consume

contigs-db functions-txt

Usage

This program takes in a functions-txt to annotate your contigs-db with functions. Basically, if you have already have the gene functions for the contigs in your contigs-db available in a file, you can import them into anvi’o using this command.

You can find a really comprehesive walkthrough of this program on this blog post about importing functions, including information about built-in anvi’o parsers for InterProScan and the EggNOG database.

If you want to overwrite any function annotations you already have, just add the tag --drop-previous-annotations.

Edit this file to update this information.

Additional Resources

• Importing functions

• Importing GhostKOALA/KEGG annotations

• Importing VirSorter phage annotaions

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.