kegg-functions

A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-run-kegg-kofams

Required or used by

anvi-display-metabolism anvi-estimate-metabolism anvi-reaction-network

Description

Kegg Orthology (KO) functional annotations, produced by finding HMM hits to the KEGG KOfam database.

You can annotate a contigs-db with these KEGG functions by running anvi-run-kegg-kofams. They will be added to the gene functions table under the source ‘KOfam’.

Another program that relies on these annotations is anvi-estimate-metabolism, which uses them to determine presence and completeness of metabolic pathways that are defined by KOs.

Edit this file to update this information.