metapangenome

A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-meta-pan-genome

Required or used by

There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.

Description

A metapangenome is a way of comparing a bunch of genomes based both on the gene clusters they contain (like in a pangenome) and their abundances in different environments/samples (using metagenomic read recruitment).

Here is a wonderful workflow that takes you through the analysis of 31 Prochlorococcus isolate genomes and 93 TARA Oceans metagenomes, based on this paper.

Edit this file to update this information.