cogs-data

A DATA-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-setup-ncbi-cogs

Required or used by

anvi-run-ncbi-cogs

Description

This basically stores a local copy of the data from the NCBI COGs database for function annotation.

It is required to run anvi-run-ncbi-cogs and is set up on your computer by the program anvi-setup-ncbi-cogs.

Database version options

Last we checked, the following versions of NCBI COGs were available:

• COG20 (the default): the 2020 release of the COGs database, described in Galperin et al. 2021
• COG14: the 2014 release of the COGs database, described in Galperin et al. 2015
• arCOG14: the archael COGs database from 2014, described in Makarova, Wolf, and Koonin 2015

Please see the help page for anvi-setup-ncbi-cogs if you want to learn how to choose which version to set up on your computer.

Edit this file to update this information.