A TXT-type anvi’o artifact. This artifact is typically provided by the user for anvi’o to import into its databases, process, and/or use.
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There are no anvi’o tools that generate this artifact, which means it is most likely provided to the anvi’o ecosystem by the user.
In its simplest form, a fasta-txt is a TAB-delmited file with two columns for
path. Here is an example:
Paths can be absolute or relative, and FASTA files can be compressed or not. That’s all up to you.
One of the primary users of the fasta-txt is the anvi’o snakemake workflows, and to make it more compatible to complex workflow needs, fasta-txt supports the following additional columns to provide more information for each FASTA file when available, such as external-gene-calls file and/or a functions-txt.
Here is an example with those additional columns:
For more information, check out the anvi’o workflow tutorial
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