pdb-db [artifact]
Table of Contents
A DB-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..
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Provided by
Required or used by
Description
What is this thing?
This is a comprehensive database of protein structures downloaded from the PDB RSCB that are non-redundant. Currently, it is used for those who want to run anvi-gen-structure-database without an internet connection.
Where does it come from?
A pdb-db can be created via the program anvi-setup-pdb-database. Alternatively, a pdb-db that contains custom structures not found in the RCSB PDB can in theory be generated by the user, but anvi’o currrently offers no reasonable way of doing this.
Notes
The pdb-db generated via anvi-setup-pdb-database is ~20GB.
Edit this file to update this information.