A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use.
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anvi-interactive anvi-matrix-to-newick anvi-script-transpose-matrix
View data refers to a matrx where each column represents a specific sample and each row describes some attribute of that sample (most often a sequence’s abundance per sample).
For example, in the pangenomics tutorial, the
PROCHLORO-functions-occurrence-frequency.txt is a view-data.
You can use this to compute a distance matrix to generate a dendrogram (using anvi-matrix-to-newick) or direclty input it to anvi-interactive to visualize the distribution of your items across samples.
Edit this file to update this information.