A script to convert SNV output obtained from anvi-gen-variability-profile to the standard VCF format.
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This script converts a variability-profile-txt into vcf (Variant Call Format).
It is very easy to run: just provide the input and output paths as so:
anvi-script-variability-to-vcf -i variability-profile-txt \ -o vcf
Note that to run this, you’ll need to have run anvi-gen-variability-profile with the default nucleotide engine.
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