quick-summary [artifact]

A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-summarize-blitz

Required or used by

There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.

Description

The output of anvi-summarize-blitz.

anvi-summarize-blitz summarizes read-recruitment statistics for a collection of bins across multiple samples. It produces long format output in which each row contains the (weighted) average statistics of a bin in a sample. Each statistic is summarized in a different column of the file.

Here is an example output file from this program, summarizing detection and mean_coverage_Q2Q3 data (the default statistics) for 3 bins across multiple samples:

unique_id	bin_name	sample	detection	mean_coverage_Q2Q3
0	bin_1	sample_1	0.015553023620503776	1.0272713907674214
1	bin_2	sample_1	0.0004871607502275562	0.0
2	bin_3	sample_1	0.0023636043452898497	0.0
3	bin_1	sample_2	0.015767421346662747	1.1101759286484367
4	bin_2	sample_2	0.0004871607502275562	0.0
5	bin_3	sample_2	0.001595914458984989	0.0
[…]	[…]	[…]	[…]	[…]

The unique_id column is just a unique index for each row. Each column after the sample column contains a different statistic (to learn how to include different or additional statistics in this output, read the anvi-summarize-blitz page.)

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