anvi-script-checkm-tree-to-interactive [program]
Table of Contents
A helper script to convert CheckM trees into anvio interactive with taxonomy information.
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Authors
Can consume
Can provide
Usage
A helper script to process CheckM tree output to generate files compatible with anvi-interactive.
An example use:
anvi-script-checkm-tree-to-interactive -t CheckM_concatenated.tree \ -o OUTPUT_PATH cd OUTPUT_PATH/ anvi-interactive -p PROFILE.db \ -t newick.tree \ -d view_data.txt \ --manual
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Additional Resources
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