anvi-script-checkm-tree-to-interactive [program]

A helper script to convert CheckM trees into anvio interactive with taxonomy information.

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Özcan C. Esen

Can consume


Can provide



A helper script to process CheckM tree output to generate files compatible with anvi-interactive.

An example use:

anvi-script-checkm-tree-to-interactive -t CheckM_concatenated.tree \ -o OUTPUT_PATH cd OUTPUT_PATH/ anvi-interactive -p PROFILE.db \ -t newick.tree \ -d view_data.txt \ --manual

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Additional Resources

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