anvi-delete-hmms [program]

Remove HMM hits from an anvi'o contigs database.

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Can provide

Can consume

contigs-db hmm-source hmm-hits


This program, as implied by the name, is used to delete a hmm-hits from a contigs-db. This way, you can repopulate the function annotations with a different source or program or just delete data that’s clogging up the interface.

It is generally a good idea to export your information before deleting it, just in case. The HMM hits will show up in most displays, so if you’ve already run anvi-summarize, you should be good.

To list available hmm-sources in a database, call

anvi-delete-hmms -c contigs-db \ --list-hmm-sources

Then, you can easily delete hmm-hits from a specific source with the command

anvi-delete-hmms -c contigs-db \ --hmm-source hmm-source

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Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.