anvi-delete-state [program]

Delete an anvi'o state from a pan or profile database.

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Can provide

Can consume

pan-db profile-db state


This program, as implied by the name, is used to delete a state from a pan-db or profile-db. This way, you can remove states that are clogging up the state list in the interface.

It is generally a good idea to export your state before deleting it, just in case ((anvi-export-state)s).

To list available states in a database, call

anvi-delete-state -p pan-db \ --list-states

Then, you can easily delete a state with the command

anvi-delete-hmms -p profile-db \ -s state

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Additional Resources

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