anvi-import-taxonomy-for-genes [program]
Table of Contents
Import gene-level taxonomy into an anvi'o contigs database.
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Can provide
Can consume
Usage
This program uses a gene-taxonomy-txt to populate the taxonomic information for the genes in a contigs-db.
Once finished, your gene taxonomy will appear as an additional layer if you open the contigs-db and an associated profile-db in anvi-interactive.
There is an entire blogpost about different ways to do this here. It outlines how to get your sequences using anvi-get-sequences-for-gene-calls than use either Kaiju or Centrifuge to get the taxonomy information for your genes. Finally, you bring that information back into anvi’o using this program.
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Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.