anvi-script-variability-to-vcf [program]
Table of Contents
A script to convert SNV output obtained from anvi-gen-variability-profile to the standard VCF format.
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Can provide
Can consume
Usage
This script converts a variability-profile-txt into vcf (Variant Call Format).
It is very easy to run: just provide the input and output paths as so:
anvi-script-variability-to-vcf -i variability-profile-txt \ -o vcf
Note that to run this, you’ll need to have run anvi-gen-variability-profile with the default nucleotide engine.
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Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.