A script to convert SNV output obtained from anvi-gen-variability-profile to the standard VCF format.
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It is very easy to run: just provide the input and output paths as so:
Note that to run this, you’ll need to have run anvi-gen-variability-profile with the default nucleotide engine.
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Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.