collection

A COLLECTION-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-cluster-contigs anvi-display-pan anvi-import-collection anvi-interactive anvi-rename-bins anvi-script-add-default-collection

Required or used by

anvi-cluster-contigs anvi-delete-collection anvi-display-metabolism anvi-estimate-genome-completeness anvi-estimate-metabolism anvi-estimate-scg-taxonomy anvi-estimate-trna-taxonomy anvi-export-collection anvi-gen-gene-level-stats-databases anvi-get-aa-counts anvi-get-codon-frequencies anvi-get-codon-usage-bias anvi-get-split-coverages anvi-merge-bins anvi-rename-bins anvi-split anvi-summarize anvi-script-gen-distribution-of-genes-in-a-bin anvi-script-gen-genomes-file

Description

An anvi’o concept that describes one or more bins.

You can generate and store a collection by selecting items on any anvi’o interactive interface or by importing them via anvi-import-collection into any anvi’o database that can store collections using the file format collection-txt.

You can always use the program anvi-show-collections-and-bins to list all collections and bins stored in a given anvi’o database.

Collections are used in many ways in anvi’o depending on your workflow as you can see from the number of programs that require or can make use of the concept collection.

Edit this file to update this information.