Takes a distance matrix, returns a newick tree.
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You can send any matrix file to this program to get a dendrogram from it.
An example run would look like this:
anvi-matrix-to-newick TAB_DELIMITED_DATA.txt \ dendrogram
By default, anvi-matrix-to-newick will cluster rows. With the flag
--transpose, it will cluster columns.
anvi-matrix-to-newick can handle missing data, but in that case the program will not normalize your data and will assume that it is already normalized.
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Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.