cazyme-data
Table of Contents
A DATA-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..
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Provided by
Required or used by
Description
This stores a local copy of the data from the dbCAN2 CAZyme HMM database for functional annotation.
It is required to run anvi-run-cazymes and is set up on your computer by the program anvi-setup-cazymes.
Database version options
The following versions of dbCAN CAZyme HMMs are currently supported by anvi’o: V9–V13.
You can find them at: https://bcb.unl.edu/dbCAN2/download/Databases/V*/dbCAN-HMMdb-V*.txt
Please see the help page for anvi-setup-cazymes if you want to learn how to choose which version to set up on your computer.
Notes for developers
dbCAN3 has multiple other files available for download https://bcb.unl.edu/dbCAN2/download/Databases/ that could be useful for future development of cazyme annotation in anvi’o including:
- Substrate prediction based on dbCAN-sub majority voting:
dbCAN_sub.hmm - CAZyme family information:
FamInfo.txt.08022020.xls
Edit this file to update this information.