anvi-setup-cazymes

Download and setup Pfam data from the EBI.

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Authors

Can consume

This program seems to know what its doing. It needs no input material from its user. Good program.

Can provide

cazyme-data

Usage

This program downloads and organizes a local copy of the data from dbCAN2 CAZyme HMMs for use in function annotation. This program generates a cazyme-data artifact, which is required to run the program anvi-run-cazymes.

Set up cazymes data

anvi’o will download the newest version of the database (V11) by default:

You can use --cazyme-version, if you want anvi’o to download a different version of the dbCAN2 CAZyme HMMs database:

The following versions have been tested for download: V9, V10, V11

By default, this data is stored at anvio/data/misc/CAZyme/. To set up this data in a non-default location, run:

If you already have a cazyme-data artifact and are trying to re-download this data, run:

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.