contig-classification

A COLLECTION-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-import-contig-classification

Required by

anvi-delete-contig-classification

Can be used by

anvi-split

Description

Contig-level classification data stored in a contigs-db.

Each contig is assigned a standardized integer class representing its predicted domain of origin, the name of the tool that produced the classification, the raw classification string from that tool, and an optional confidence score. Multiple sources (tools) can coexist in the same database, keyed by the source column value. See contig-classification-txt to learn how to format classification data into an input file for anvi-import-contig-classification.

The standardized class vocabulary is:

Class	Meaning
0	Non-eukaryotic
1	Eukaryotic
2	Virus
3	Plasmid
4	Organelle
5	Unclassified

These standardized classes aren’t enough for you? Let us know by opening an issue in the anvi’o Github repository.

Edit this file to update this information.