genome-pairs

A TXT-type anvi’o artifact. This artifact is typically provided by the user for anvi’o to import into its databases, process, and/or use.

🔙 To the main page of anvi’o programs and artifacts.

Provided by

There are no anvi’o tools that generate this artifact, which means it is most likely provided to the anvi’o ecosystem by the user.

Required or used by

anvi-predict-metabolic-exchanges

Description

This input file type describes pairs of genomes that go together in an analysis, and is usually paired with an external-genomes file that describes where the ‘contigs-db‘ssociated with each genome name is located.

In the context of anvi-predict-metabolic-exchanges, this file describes which pairs of genomes to predict exchanges between.

The file should be tab-delimited and contain at least two columns named genome_1 and genome_2. Here is an example:

genome_1	genome_2
name_of_one_genome	name_of_another_genome
E_coli	Pelagibacter_sp
another_genome	awesomegenome

As long as the genome names match to those described in the accompanying external-genomes file, you should be good to go.

Edit this file to update this information.