anvi-delete-contig-classification
Table of Contents
Remove contig classification data from an anvi'o contigs database.
🔙 To the main page of anvi’o programs and artifacts.
Authors
Requires
contigs-db 
contig-classification 
Provides
This program does not seem to provide any artifacts. Such programs usually print out some information for you to see or alter some anvi’o artifacts without producing any immediate outputs.
Usage
This program removes contig-classification data from a contigs-db.
You must provide --just-do-it to confirm the deletion — this is a destructive operation and cannot be undone. For safety, we haven’t included the --just-do-it flag in the example commands below.
To see what classification sources exist in a database before deleting:
anvi-delete-contig-classification -c contigs-db \ --list-contig-classification-sources
To delete data from a specific source:
anvi-delete-contig-classification -c contigs-db \ --source genomad
To delete ALL contig classification data from the database:
anvi-delete-contig-classification -c contigs-db
Edit this file to update this information.
Command line interface
The following is the list of parameters and their descriptions in the latest version of anvi-delete-contig-classification.
The code that generates this web page ensures that this information is the latest available in 9-dev (eunice). Which means, in some cases the information in this section (generated automatically) might be more comprehensive or up-to-date compared to the descriptions above (written by humans).
Command line usage
Parameters and their descriptions
-c, --contigs-dbCONTIGS_DBrequired- Anvi'o contigs database generated by 'anvi-gen-contigs-database'
--sourceSOURCE- The classification source to delete. If not provided, ALL classification data will be deleted from the database.
--just-do-it- Don't bother me with questions or warnings, just do it.
-l, --list-contig-classification-sources- List available contig classification sources in the contigs database and quit.
Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.