anvi-delete-functions

Authors
Requires
Can use
Provides
Usage
Command line interface

Command line usage
Parameters and their descriptions

Additional Resources

Remove functional annotation sources from an anvi'o contigs database.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Requires

contigs-db

Can use

functions

Provides

This program does not seem to provide any artifacts. Such programs usually print out some information for you to see or alter some anvi’o artifacts without producing any immediate outputs.

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-delete-functions.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Command line interface

The following is the list of parameters and their descriptions in the latest version of anvi-delete-functions.

The code that generates this web page ensures that this information is the latest available in 9-dev (eunice). Which means, in some cases the information in this section (generated automatically) might be more comprehensive or up-to-date compared to the descriptions above (written by humans).

Command line usage

anvi-delete-functions [-h] -c CONTIGS_DB [--annotation-sources FUNCTION_ANNOTATION_SOURCE[S]] [-l]

Parameters and their descriptions

options

-c, --contigs-db CONTIGS_DB required: Anvi'o contigs database generated by 'anvi-gen-contigs-database'
--annotation-sources FUNCTION_ANNOTATION_SOURCE[S]: One or more functional annotations sources to drop. If you wish to remove more than one, separate them from each other using a comma character without a space. For example: 'SOURCE_1,SOURCE_2,SOURCE_3'.
-l, --list-annotation-sources: List available functional annotation sources.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.