anvi-export-gene-clusters

Authors
Requires
Provides
Usage
Command line interface

Command line usage
Parameters and their descriptions

Additional Resources

Export gene clusters in a pan-db as a three-column, TAB-delimited file that associates each gene call in each genome with a gene cluster.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Requires

pan-db

Provides

gene-clusters-txt

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-export-gene-clusters.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Command line interface

The following is the list of parameters and their descriptions in the latest version of anvi-export-gene-clusters.

The code that generates this web page ensures that this information is the latest available in 9-dev (eunice). Which means, in some cases the information in this section (generated automatically) might be more comprehensive or up-to-date compared to the descriptions above (written by humans).

Command line usage

anvi-export-gene-clusters [-h] -p PAN_DB [-o FILE_PATH]

Parameters and their descriptions

INPUT PAN DATABASE You want to export gene clusters from where?

-p, --pan-db PAN_DB required: Anvi'o pan database

MATTERS OF REPORTING

-o, --output-file FILE_PATH: File path to store results.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.