anvi-import-state

Authors
Requires
Can use
Provides
Usage
Command line interface

Command line usage
Parameters and their descriptions

Additional Resources

Import an anvi'o state into a profile database.

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Authors

A. Murat Eren (Meren)

Requires

state-json profile-db

Can use

pan-db

Provides

state

Usage

This program allows you to import a state from a state-json.

You can run this program on a profile-db or pan-db like so:

anvi-import-state -p profile-db \ -s state-json \ -n MY_STATE

This will import the state described in your state-json into your profile-db with the name MY_STATE.

Edit this file to update this information.

Command line interface

The following is the list of parameters and their descriptions in the latest version of anvi-import-state.

The code that generates this web page ensures that this information is the latest available in 9-dev (eunice). Which means, in some cases the information in this section (generated automatically) might be more comprehensive or up-to-date compared to the descriptions above (written by humans).

Command line usage

anvi-import-state [-h] -p PAN_OR_PROFILE_DB -s STATE_FILE -n STATE_NAME

Parameters and their descriptions

options

-p, --pan-or-profile-db PAN_OR_PROFILE_DB required: An anvi'o pan-db or profile-db (and even genes-db or pan-graph-db in appropriate contexts).
-s, --state STATE_FILE required: JSON serializable anvi'o state file.
-n, --name STATE_NAME required: State name.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.