anvi-script-gen-fasta-txt
Table of Contents
Create the fasta.txt file.
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Authors
Requires
Provides
Usage
This program scans a directory for FASTA files and generates a fasta-txt file that lists each one with its name and path.
A default run looks like this:
anvi-script-gen-fasta-txt --input-dir path/to/fasta/dir \ -o fasta-txt
The program identifies all FASTA-formatted files in the given directory, uses the filename (without extension) as the sequence name, and writes a TAB-delimited fasta-txt file ready for use with other anvi’o programs.
Edit this file to update this information.
Command line interface
The following is the list of parameters and their descriptions in the latest version of anvi-script-gen-fasta-txt.
The code that generates this web page ensures that this information is the latest available in 9-dev (eunice). Which means, in some cases the information in this section (generated automatically) might be more comprehensive or up-to-date compared to the descriptions above (written by humans).
Command line usage
Parameters and their descriptions
Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.