This script generates a FASTA file of tRNA-seq seeds with permuted nucleotides at positions of predicted modification-induced substitutions. The underlying nucleotide without modification is not always the most common base call. The resulting FASTA file can be queried against a database of tRNA genes to validate nucleotides at modified positions and find the most similar sequences..
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No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-script-permute-trnaseq-seeds.md”. For a template, you can use the markdown file for
anvi-gen-contigs-database. THANK YOU!
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.