A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..
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anvi-export-gene-coverage-and-detection anvi-export-splits-and-coverages anvi-get-split-coverages anvi-script-get-coverage-from-bam
There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.
This is a text file containing the average coverage for each contig in each sample that was in the profile-db and contigs-db that you used when you ran anvi-export-splits-and-coverages or anvi-export-gene-coverage-and-detection.
This is a tab-delimited file where each row describes a specific split/gene and each column describes one of your samples. Each cell contains the average coverage of that contig in that sample.
This artifact is really only used when taking information out of anvi’o, so enjoy your coverage information :)
(the type of output you would get from anvi-export-splits-and-coverages)
contig sample_1 sample_2 sample_3 ... Day1_contig1_split1 5.072727 4.523432 1.2343243 Day1_contig1_split2 6.895844 5.284812 9.3721947 Day1_contig2_split1 2.357049 3.519150 8.2385691 ...
(the type of output you would get from anvi-export-gene-coverage-and-detection)
key sample_1 sample_2 sample_3 ... 13947 10.29109 1.984394 6.8289432 13948 34.89584 6.284812 3.3721947 23026 23.94938 9.239235 13.238569 ...
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