Mike Lee of anvi'o


Bioinformatician who explores microbial ecology and evolution in a wide range of environments.


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Program contributions


Resource contributions

Tutorials and exercises

Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.

An introduction to Unix Basics of the command line environment, the best friend of any scientist who wishes to work with data.
hands-on beginner

Technical write-ups

Solutions or discussions regarding matters that are typically more technical than scientific.

Anvi'o 'views' demystified Default data views in anvi'o intearctive interface
interactive interface theoretical beginner
Combining reference genome annotations with your own in pangenomes Demonstration of a way to incorporate new genomes with reference genomes from NCBI, while maintaining their vetted reference-genome annotations.
pangenomics hands-on intermediate