Amy D. Willis of anvi'o
Bio
Statistician and data scientist developing methods for the analysis of biodiversity, with a particular focus on the microbiome.
Affiliations
currentPrincipal Investigator, Statistical Diversity Lab, University of WashingtoncurrentAssistant Professor, Department of Biostatistics, University of Washington
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Program contributions
anvi-compute-functional-enrichment-across-genomes anvi-compute-functional-enrichment-in-pan anvi-compute-metabolic-enrichment anvi-script-gen-functions-per-group-stats-output
Resource contributions
Tutorials and exercises
Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.
A tutorial for differential abundance analysis using output from anvi'o's `anvi-estimate-scg-taxonomy`
A tutorial for modelling gene presence in R using the output of `anvi-export-functions`