A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use.
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This is a text file that contains the information for a misc-data-items-order, used for importing into and exporting this information from your anvi’o project.
If you intend to import a tree order, the contents of your file should look something like this (but probably much more complicated depending on the number of items in your anvi’o database):
(contig_4, ((contig_1, contig_2), contig_3))
When a NEWICK order is imported into an anvi’o project, the contigs will be displayed in the order
contig_4, contig_1, contig_2, contig_3, and the following tree will be generated in the interface:
contig_4 contig_1 contig_2 contig_3 | | | | | ------------- | | | | | ------------------- | | ----------------------------- | |
Alternative to the NEWICK order, you can provide a list of items in flat form. For instance, if you want to order your items this way, your text file should look like the following, where each line contains a single item name in your database:
contig_4 contig_1 contig_2 contig_3
After importing an order into a database, you may need to specifically select that order in the interactive interface through the “Item orders” dropbox and re-draw your display to change the default order.
Edit this file to update this information.