Export a collection from an anvi'o database.
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This program, as one might think, allows you to export a collection. This allows you to take your binning results elsewhere (including into another Anvi’o project with the command anvi-import-collection).
You can run this program on a profile-db or pan-db as follows:
anvi-export-collection -C my_favorite_collection \ -p profile-db
This will give you a collection-txt file that describes the collection
To list the collections available in this database, you can run
anvi-export-collection -p pan-db \ --list-colllections
You can also add the flag
--include-unbinned to have all unbinned contigs in the database show up at the end of your collection-txt file in a bin titled
Edit this file to update this information.
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.