Export an item order from an anvi'o database.
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misc-data-items-order-txt dendrogram phylogeny
This program, as one might think, allows you to export a misc-data-items-order, outputing a misc-data-items-order-txt.
You can export one of the item orders in a profile-db or pan-db as follows:
anvi-export-items-order -p profile-db \ --name cov
cov here refers to the tree that is generated using only differential coverage. Almost all anvi’o profile databases will also have available an items-order based on the tetranucleotide frequency called
tnf, and one based on both called
However, to list the item orders available in this database, just don’t include the name flag.
anvi-export-items-order -p pan-db
You’ll get a
Config Error that will tell you what item orders are available.
Edit this file to update this information.
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.