A script to add a 'DEFAULT' collection in an anvi'o pan or profile database with either (1) a single bin that describes all items available in the profile database, or (2) as many bins as there are items in the profile database wher every item has its own bin. The former is the default behavior that will be useful in most instances where you need to use this script. The latter is most useful if you are Florian and/or have something very specific in mind..
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This way, you can perform anvi’o tasks that require a collection or a bin even if you do not have a particular collection for your data, or all items in your database represent a meaningful bin (such as every contig in a contigs-db that represents a single genome).
Run in its simples form,
the program will add a new collection into the profile database named
DEFAULT, which will contain a single bin that describes all items in the database named
EVERYTHING. You can set these default names to your liking using additional parameters:
Edit this file to update this information.
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.