A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..
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There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.
This file is the output of anvi-script-gen-hmm-hits-matrix-across-genomes and describes the hmm-hits across multiple genomes or bins for a single hmm-source.
The first column describes each of the genomes (if the input was an external-genomes) or bins (if the input was an internal-genomes) that the matrix describes. The following columns describe each of the genes in your hmm-source. The data within the table describes the number of hits that gene had in that genome or bin.
For example, if you were to run anvi-script-gen-hmm-hits-matrix-across-genomes with the
Bacteria_71 hmm-source on two hypothetical genomes, you would get a file like this:
genome_or_bin ADK AICARFT_IMPCHas ATP-synt ATP-synt_A Adenylsucc_synt Chorismate_synt EF_TS ... Genome_1 11 10 9 9 11 8 9 ... Genome_2 2 1 1 2 3 2 2 ...
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