misc-data-amino-acids-txt

A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use.

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Provided by

anvi-export-misc-data

Required or used by

anvi-import-misc-data

Description

This a tab-delimited text file that describes information contained in a misc-data-amino-acids.

To import this information into a database, use anvi-import-misc-data.

In this table, the first column should provide two pieces of information, both identifying a specific amino acid residue: the gene caller id (for the gene this residue is on) and its codon order in that gene. These should be separated by a colon. The following columns can contain any categorical or numerical data of your choosing.

Here is an example with very abstract data:

item_name   categorical_data   numerical_data     data_group
  1:42            group_1          4.3245         cool_data 
  6:3             group_2          1.3542         cool_data
  9:96            group_1          3.2526         cool_data
  ...

There is another example of this table here. The second table on this page is what you would provide to anvi-import-misc-data, whereas the first lays out the same data more conceptually.

Edit this file to update this information.