A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use.
🔙 To the main page of anvi’o programs and artifacts.
This a tab-delimited text file that describes information contained in a misc-data-amino-acids.
To import this information into a database, use anvi-import-misc-data.
In this table, the first column should provide two pieces of information, both identifying a specific amino acid residue: the gene caller id (for the gene this residue is on) and its codon order in that gene. These should be separated by a colon. The following columns can contain any categorical or numerical data of your choosing.
Here is an example with very abstract data:
item_name categorical_data numerical_data data_group 1:42 group_1 4.3245 cool_data 6:3 group_2 1.3542 cool_data 9:96 group_1 3.2526 cool_data ...
There is another example of this table here. The second table on this page is what you would provide to anvi-import-misc-data, whereas the first lays out the same data more conceptually.
Edit this file to update this information.