misc-data-items

A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

🔙 To the main page of anvi’o programs and artifacts.

Provided by

anvi-get-sequences-for-gene-clusters anvi-import-misc-data anvi-search-sequence-motifs

Required or used by

anvi-delete-misc-data anvi-export-misc-data

Description

This is the section of your profile-db/pan-db that contains custom additional information about each of the items in the central section of the interactive interface. When you run anvi-interactive, this data will appear as additional concentric circles.

As also defined in this blog post, this type of data will include information about each item (whether that’s a contig, gene, or bin). This data is either numerical or categorical and can be imported into another database from a misc-data-items-txt using anvi-import-misc-data. It is also displayed when you run anvi-show-misc-data and can be exported or deleted with anvi-export-misc-data and anvi-delete-misc-data respectively.

To change the order that the items are displayed in, take a look at anvi-import-items-order.

For example, this information could describe whether or not each bin reached a certain completion threshold, the e-score of the function annotation on each gene, or different categories that the total length of a contig could fall into (1-1.5 kb, 1.5-2 kb, 2-2.5 kb, and so on).

Edit this file to update this information.