anvi-script-pfam-accessions-to-hmms-directory
Table of Contents
You give this program one or more PFAM accession ids, and it generates an anvi'o compatible HMM directory to be used with anvi-run-hmms.
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Authors
Can consume
Can provide
Usage
You give this program one or more PFAM accession ids, and it generates an anvi’o compatible HMM directory hmm-source to be used with anvi-run-hmms.
Basic usage
You may either specify a list of PFAM accession with --pfam-accessions-list:
anvi-script-pfam-accessions-to-hmm-directory --pfam-accessions-list ACC1 ACC2 -O output
Or a file containing this list using --pfam-accessions-file. The file should have one accession number per line:
anvi-script-pfam-accessions-to-hmm-directory --pfam-accessions-file file.txt -O output
Output folder is specified by -O and the folder will be created by anvi’o if it doesn’t exist, otherwise anvi’o will exist.
Edit this file to update this information.
Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.