misc-data-nucleotides-txt [artifact]


A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use.

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This a tab-delimited text file that describes information contained in a misc-data-nucleotides.

To import this information into a database, use anvi-import-misc-data.

In this table, the first column should provide two pieces of information, both identifying a specific nucleotide position: the name of the contig the nucleotide is on, and its position on that contig. These should be separated by a colon. The following columns can contain any categorical or numerical data of your choosing.

Here is an example with very abstract data:

item_name   categorical_data  numerical_data    data_group
contig_1:4       group_1          4.3245         cool_data 
contig_4:72      group_2          1.3542         cool_data
contig_7:24      group_1          3.2526         cool_data

For a more concrete example, check out the example table for misc-data-amino-acids (which is formatted very similarly) here. The second table on this page is what you would provide to anvi-import-misc-data.

Edit this file to update this information.