This program runs NCBI's COGs to associate genes in an anvi'o contigs database with functions. COGs database was been designed as an attempt to classify proteins from completely sequenced genomes on the basis of the orthology concept..
🔙 To the main page of anvi’o programs and artifacts.
This program assumes that the user has successfully set up the COGs database on their computer using the anvi’o program anvi-setup-ncbi-cogs.
Without the flag
--cog-data-dir, anvi’o will just search in the default location.
You can also use blastp to search, by running:
anvi-run-ncbi-cogs -c contigs-db \ --search-with blastp
Edit this file to update this information.
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.