This program generates an anvi'o compatible HMM directory to be used with anvi-run-hmms from the MDMParis Defense Finder Models..

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Can consume


Can provide



This script downloads all the HMM models made public by the MDM-Paris lab in their public repository and converts it to an anvi’o compatible hmm-source.

Basic usage

The command will create the hmm-source in a folder called DefenseFinder_HMM in the current directory, if no such folder exists.


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Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.