Find below each resource tagged with theoretical. You can also go back to see all resources.

Tutorials and exercises

Tutorials are the best way to start learning anvi’o. They typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi’o often with hands-on experience (add more here).

Basics of metagenomic read recruitment A very simple introduction to metagenomic read recruitment.
Anvi'o phylogenomics workflow A comprehensive description of the anvi'o phylogenomics workflow.
Anvi'o tools for microbial population genetics A theoretical tutorial describing how to characterize SNVs, SCVs and SAAVs with anvi’o, and how to interpret the output.

Technical write-ups

Articles listed this section offer solutions or discussions regarding matters that are typically more technical than scientific (add more here).

Anvi'o 'views' demystified Default data views in anvi'o intearctive interface
Combining multiple 'omics data types A workflow that describes how to combine metagenomics and metatrasncriptomics data appropriately.

Articles, workflows, opinions

These resources often cover key insights into specific topics and can be useful to more advanced users and ‘omics enthusiasts in general (add more here).

An Akkermansia story with MinION long-reads An application of metagenomic long-read sequencing, assembly, correction, and the use of anvi'o pangenomics workflow to benchmark outcomes.

Developer and contributor resources

Here you will find technical documentation to help you learn how to contribute to anvi’o, as a developer or otherwise (add more here).

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