Florian Trigodet of anvi'o
Bio
Microbiologist using advanced computational strategies to make sense of the microbial ecology of complex habitats.
Affiliations
currentPost-doctoral Scientist, Helmholtz Institute for Functional Marine Biodiversity at OldenburgpastPost-doctoral Scientist, The Department of Medicine at the University of Chicago
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Program contributions
anvi-display-contigs-stats anvi-report-inversions
Resource contributions
Tutorials and exercises
Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.
A hands-on tutorial to learn how to integrate single-cell genomics data. It covers functional and taxonomic assignment, pangenomic and phylogenomic analyses, and more.
Using publicly available genomes and metagenomes, and anvi'o build in snakemake workflow to contextualize a genome of interest.
Articles, workflows, opinions
Key insights into specific topics and can be useful to more advanced users and 'omics enthusiasts in general.
An application of metagenomic long-read sequencing, assembly, correction, and the use of anvi'o pangenomics workflow to benchmark outcomes.