Florian Trigodet of anvi'o
Bio
Microbiologist using advanced computational strategies to make sense of the microbial ecology of complex habitats.
Affiliations
currentSenior Scientist, Alfred Wegener Institute for Polar and Marine ResearchcurrentSenior Scientist, Helmholtz Institute for Functional Marine BiodiversitycurrentAssociate Junior Fellow, Hanse-Wissenschaftskolleg, Institute for Advanced StudypastPost-doctoral Scientist, Helmholtz Institute for Functional Marine BiodiversitypastPost-doctoral Scientist, The Department of Medicine at the University of Chicago
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Resource contributions
Tutorials and exercises
Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.
A hands-on tutorial to learn how to integrate single-cell genomics data. It covers functional and taxonomic assignment, pangenomic and phylogenomic analyses, and more.
Using publicly available genomes and metagenomes, and anvi'o built-in snakemake workflows to contextualize a genome of interest.
A multi-purpose tutorial based on human oral microbiome data
Articles, workflows, opinions
Key insights into specific topics and can be useful to more advanced users and 'omics enthusiasts in general.
An application of metagenomic long-read sequencing, assembly, correction, and the use of anvi'o pangenomics workflow to benchmark outcomes.