Computational biologist and software developer. For my PhD I studied how selective pressures shape the evolution of proteins in naturally occurring microbial populations.
pastGraduate Student, The Biophysical Sciences Program at the University of Chicago
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Some contributions are more than code. Inevitably, this manually curated list will be incomplete for almost everyone, but nevertheless, we try to keep track of key contributions made by memebers of the anvi'o commmunity to the platform and its users. Edit these files to help.
anvi-compute-genome-similarity anvi-db-info anvi-delete-misc-data anvi-dereplicate-genomes anvi-display-structure anvi-export-gene-calls anvi-export-locus anvi-export-misc-data anvi-export-structures anvi-gen-contigs-database anvi-gen-fixation-index-matrix anvi-gen-structure-database anvi-gen-variability-profile anvi-get-pn-ps-ratio anvi-get-short-reads-from-bam anvi-import-misc-data anvi-init-bam anvi-migrate anvi-profile anvi-report-inversions anvi-run-hmms anvi-run-interacdome anvi-search-palindromes anvi-setup-interacdome anvi-setup-pdb-database anvi-show-misc-data anvi-update-structure-database anvi-script-filter-fasta-by-blast anvi-script-gen-pseudo-paired-reads-from-fastq anvi-script-get-coverage-from-bam anvi-script-reformat-fasta
Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.
Solutions or discussions regarding matters that are typically more technical than scientific.
Key insights into specific topics and can be useful to more advanced users and 'omics enthusiasts in general.