Florian Trigodet of anvi'o
Bio
Microbiologist using advanced computational strategies to make sense of the microbial ecology of complex habitats.
Affiliations
currentPost-doctoral Scientist, Helmholtz Institute for Functional Marine Biodiversity at OldenburgpastPost-doctoral Scientist, The Department of Medicine at the University of Chicago
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Program contributions
anvi-display-contigs-stats anvi-report-inversions
Resource contributions
Tutorials and exercises
Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.
A hands-on tutorial to learn how to integrate single-cell genomics data into the anvi'o environment that covers the integration of SAGs into the anvi'o environment, performing pangenomic and phylogenomic analyses with them, and more.
Using publicly available genomes and metagenomes, and anvi'o build in snakemake workflow to contextualize a genome of interest.
Articles, workflows, opinions
Key insights into specific topics and can be useful to more advanced users and 'omics enthusiasts in general.
An application of metagenomic long-read sequencing, assembly, correction, and the use of anvi'o pangenomics workflow to benchmark outcomes.